Arkitekt: streaming analysis and real-time workflows for microscopy
Johannes Roos, Stéphane Bancelin, Tom Delaire, Alexander Wilhelmi, Florian Levet, Maren Engelhardt, Virgile Viasnoff, Rémi Galland, U. Valentin Nägerl, Jean-Baptiste Sibarita
Nat Methods. 2024-09-18
10.1038/s41592-024-02404-5

Protocol for matching protein localization to synapse morphology in primary rat neurons by correlative super-resolution microscopy
Tiffany Cloâtre, Magali Mondin, Jean-Baptiste Sibarita, Florian Levet, Olivier Thoumine
STAR Protocols. 2024-09-01
10.1016/j.xpro.2024.103160

Neuroligin-1 dependent phosphotyrosine signaling in excitatory synapse differentiation
Zsófia Szíber, Adèle Drouet, Magali Mondin, Florian Levet, Olivier Thoumine
Front. Mol. Neurosci.. 2024-05-15
10.3389/fnmol.2024.1359067

Multi-synaptic boutons are a feature of CA1 hippocampal connections in the stratum oriens
Mark Rigby, Federico W. Grillo, Benjamin Compans, Guilherme Neves, Julia Gallinaro, Sophie Nashashibi, Sally Horton, Pedro M. Pereira Machado, Maria Alejandra Carbajal, Gema Vizcay-Barrena, Florian Levet, Jean-Baptiste Sibarita, Angus Kirkland, Roland A. Fleck, Claudia Clopath, Juan Burrone
Cell Reports. 2023-05-01
10.1016/j.celrep.2023.112397

PoCA: a software platform for point cloud data visualization and quantification
Florian Levet, Jean-Baptiste Sibarita
Nat Methods. 2023-03-03
10.1038/s41592-023-01811-4

A framework for evaluating the performance of SMLM cluster analysis algorithms
Daniel J. Nieves, Jeremy A. Pike, Florian Levet, David J. Williamson, Mohammed Baragilly, Sandra Oloketuyi, Ario de Marco, Juliette Griffié, Daniel Sage, Edward A. K. Cohen, Jean-Baptiste Sibarita, Mike Heilemann, Dylan M. Owen
Nat Methods. 2023-02-01
10.1038/s41592-022-01750-6

MID3A: Microscopy Image Denoising meets Differentiable Data Augmentation
Felix Fuentes-Hurtado, Tom Delaire, Florian Levet, Jean-Baptiste Sibarita, Virgile Viasnoff
2022 International Joint Conference on Neural Networks (IJCNN). 2022-07-18
10.1109/IJCNN55064.2022.9892954

Automated high-speed 3D imaging of organoid cultures with multi-scale phenotypic quantification
Anne Beghin, Gianluca Grenci, Geetika Sahni, Su Guo, Harini Rajendiran, Tom Delaire, Saburnisha Binte Mohamad Raffi, Damien Blanc, Richard de Mets, Hui Ting Ong, Xareni Galindo, Anais Monet, Vidhyalakshmi Acharya, Victor Racine, Florian Levet, Remi Galland, Jean-Baptiste Sibarita, Virgile Viasnoff
Nat Methods. 2022-06-13
10.1038/s41592-022-01508-0

A synaptomic analysis reveals dopamine hub synapses in the mouse striatum
Vincent Paget-Blanc, Marlene E. Pfeffer, Marie Pronot, Paul Lapios, Maria-Florencia Angelo, Roman Walle, Fabrice P. Cordelières, Florian Levet, Stéphane Claverol, Sabrina Lacomme, Mélina Petrel, Christelle Martin, Vincent Pitard, Véronique De Smedt Peyrusse, Thomas Biederer, David Perrais, Pierre Trifilieff, Etienne Herzog
Nat Commun. 2022-06-03
10.1038/s41467-022-30776-9

Editorial: Methods and Tools for Bioimage Analysis
Florian Levet, Virginie Uhlmann, Florian Jug
Front. Comput. Sci.. 2022-05-30
10.3389/fcomp.2022.931939

CaMKII activation persistently segregates postsynaptic proteins via liquid phase separation
Tomohisa Hosokawa, Pin-Wu Liu, Qixu Cai, Joana S. Ferreira, Florian Levet, Corey Butler, Jean-Baptiste Sibarita, Daniel Choquet, Laurent Groc, Eric Hosy, Mingjie Zhang, Yasunori Hayashi
Nat Neurosci. 2021-04-29
10.1038/s41593-021-00843-3

Developing open-source software for bioimage analysis: opportunities and challenges
Florian Levet, Anne E. Carpenter, Kevin W. Eliceiri, Anna Kreshuk, Peter Bankhead, Robert Haase
F1000Res. 2021-04-19
10.12688/f1000research.52531.1

CaMKII activation triggers persistent formation and segregation of postsynaptic liquid phase
Tomohisa Hosokawa, Pin-Wu Liu, Qixu Cai, Joana S. Ferreira, Florian Levet, Corey Butler, Jean-Baptiste Sibarita, Daniel Choquet, Laurent Groc, Eric Hosy, Mingjie Zhang, Yasunori Hayashi
. 2020-11-26
10.1101/2020.11.25.397091

Distance-dependent regulation of NMDAR nanoscale organization along hippocampal neuron dendrites
Joana S. Ferreira, Julien P. Dupuis, Blanka Kellermayer, Nathan Bénac, Constance Manso, Delphine Bouchet, Florian Levet, Corey Butler, Jean-Baptiste Sibarita, Laurent Groc
Proc Natl Acad Sci USA. 2020-09-14
10.1073/pnas.1922477117

Author Correction: Structural basis of astrocytic Ca2+ signals at tripartite synapses
Misa Arizono, V. V. G. Krishna Inavalli, Aude Panatier, Thomas Pfeiffer, Julie Angibaud, Florian Levet, Mirelle J. T. Ter Veer, Jillian Stobart, Luigi Bellocchio, Katsuhiko Mikoshiba, Giovanni Marsicano, Bruno Weber, Stéphane H. R. Oliet, U. Valentin Nägerl
Nat Commun. 2020-05-18
10.1038/s41467-020-16453-9

Structural basis of astrocytic Ca2+ signals at tripartite synapses
Misa Arizono, V. V. G. Krishna Inavalli, Aude Panatier, Thomas Pfeiffer, Julie Angibaud, Florian Levet, Mirelle J. T. Ter Veer, Jillian Stobart, Luigi Bellocchio, Katsuhiko Mikoshiba, Giovanni Marsicano, Bruno Weber, Stéphane H. R. Oliet, U. Valentin Nägerl
Nat Commun. 2020-04-20
10.1038/s41467-020-15648-4

SpineJ: A software tool for quantitative analysis of nanoscale spine morphology
Florian Levet, Jan Tønnesen, U. Valentin Nägerl, Jean-Baptiste Sibarita
Methods. 2020-03-01
10.1016/j.ymeth.2020.01.020

Synaptic and supra-synaptic organisation of the dopaminergic projection to the striatum.
Marlene Pfeffer, Marie Pronot, Maria Florencia Angelo, Roman Walle, Fabrice P Cordelieres, Florient Levet, Stephane Claverol, Sabrina Lacome, Melina Petrel, Christelle Martin, Vincent Pitard, Veronique Desmedt-Peyrusse, Thomas Biederer, Pierre Trifilieff, Etienne Herzog
. 2020-02-18
10.1101/2020.02.18.952978

A super-resolution platform for correlative live single-molecule imaging and STED microscopy
V. V. G. Krishna Inavalli, Martin O. Lenz, Corey Butler, Julie Angibaud, Benjamin Compans, Florian Levet, Jan Tønnesen, Olivier Rossier, Gregory Giannone, Olivier Thoumine, Eric Hosy, Daniel Choquet, Jean-Baptiste Sibarita, U. Valentin Nägerl
Nat Methods. 2019-10-21
10.1038/s41592-019-0611-8

SpineJ : A software tool for quantitative analysis of nanoscale spine morphology
Florian Levet, Jan Tønnesen, Valentin Nägerl, Jean-Baptiste Sibarita
. 2019-09-10
10.1101/764548

Differential role of pre- and postsynaptic neurons in the activity-dependent control of synaptic strengths across dendrites
Mathieu Letellier, Florian Levet, Olivier Thoumine, Yukiko Goda
PLoS Biol. 2019-06-05
10.1371/journal.pbio.2006223

A tessellation-based colocalization analysis approach for single-molecule localization microscopy
Florian Levet, Guillaume Julien, Rémi Galland, Corey Butler, Anne Beghin, Anaël Chazeau, Philipp Hoess, Jonas Ries, Grégory Giannone, Jean-Baptiste Sibarita
Nat Commun. 2019-05-30
10.1038/s41467-019-10007-4

Fast Sampling of Implicit Surfaces by Particle Systems
F. Levet, X. Granier, C. Schlick
IEEE International Conference on Shape Modeling and Applications 2006 (SMI'06).
10.1109/smi.2006.13

Multi-view Sketch-Based FreeForm Modeling
Florian Levet, Xavier Granier, Christophe Schlick
Smart Graphics.
10.1007/978-3-540-73214-3_21

Thor: Sketch-Based 3D Modeling by Skeletons
Romain Arcila, Florian Levet, Christophe Schlick
Smart Graphics.
10.1007/978-3-540-85412-8_22

Quantifying protein densities on cell membranes using super-resolution optical fluctuation imaging
Tomáš Lukeš, Daniela Glatzová, Zuzana Kvíčalová, Florian Levet, Aleš Benda, Sebastian Letschert, Markus Sauer, Tomáš Brdička, Theo Lasser, Marek Cebecauer
Nat Commun. 2017-11-23
10.1038/s41467-017-01857-x

Localization-based super-resolution imaging meets high-content screening
Anne Beghin, Adel Kechkar, Corey Butler, Florian Levet, Marine Cabillic, Olivier Rossier, Gregory Giannone, Rémi Galland, Daniel Choquet, Jean-Baptiste Sibarita
Nat Meth. 2017-10-30
10.1038/nmeth.4486

SR-Tesseler: a method to segment and quantify localization-based super-resolution microscopy data.
Florian Levet, Eric Hosy, Adel Kechkar, Corey Butler, Anne Beghin, Daniel Choquet, Jean-Baptiste Sibarita
Nat Methods. 2015-09-07
10.1038/nmeth.3579

Frequency of Cocaine Self-Administration Influences Drug Seeking in the Rat: Optogenetic Evidence for a Role of the Prelimbic Cortex
Elena Martín-García, Julien Courtin, Prisca Renault, Jean- François Fiancette, Hélène Wurtz, Amélie Simonnet, Florian Levet, Cyril Herry, Véronique Deroche-Gamonet
Neuropsychopharmacol. 2014-03-17
10.1038/npp.2014.66

Automatic non-parametric capsid segmentation using wavelets transform and graph
Florian Levet, Aurelia Cassany, Michael Kann, Jean-Baptiste Sibarita
2012 9th IEEE International Symposium on Biomedical Imaging (ISBI). 2012-05-01
10.1109/isbi.2012.6235822

Neurexin-neuroligin adhesions capture surface-diffusing AMPA receptors through PSD-95 scaffolds.
M. Mondin, V. Labrousse, E. Hosy, M. Heine, B. Tessier, F. Levet, C. Poujol, C. Blanchet, D. Choquet, O. Thoumine
Journal of Neuroscience. 2011-09-21
10.1523/jneurosci.6439-10.2011

Neurexin-Neuroligin Adhesions Capture Surface-Diffusing AMPA Receptors through PSD-95 Scaffolds
M. Mondin, V. Labrousse, E. Hosy, M. Heine, B. Tessier, F. Levet, C. Poujol, C. Blanchet, D. Choquet, O. Thoumine
Journal of Neuroscience. 2011-09-21
10.1523/jneurosci.6439-10.2011

Dynamic superresolution imaging of endogenous proteins on living cells at ultra-high density.
Gregory Giannone, Eric Hosy, Florian Levet, Audrey Constals, Katrin Schulze, Alexander I. Sobolevsky, Michael P. Rosconi, Eric Gouaux, Robert Tampé, Daniel Choquet, Laurent Cognet
Biophysical Journal. 2010-08-01
10.1016/j.bpj.2010.06.005

Improved skeleton extraction and surface generation for sketch-based modeling
Florian Levet, Xavier Granier
Proceedings of Graphics Interface 2007 on - GI '07. 2007-01-01
10.1145/1268517.1268524

3D Sketching with Profile Curves
Florian Levet, Xavier Granier, Christophe Schlick
Smart Graphics. 2006-01-01
10.1007/11795018_11